A. Desoeuvres, A. Iosif, C. Lüders, O. Radulescu, H. Rahkooy, M. Seiß, T. Sturm A Computational Approach to Polynomial Conservation Laws
SIAM Journal on Applied Dynamical Systems
A. Jiménez-Pastor, A. Leguizamon-Robayo, M. Tschaikowski, A. Vandin Approximate Reductions of Rational Dynamical Systems in CLUE
Computational Methods in Systems Biology
A. Leguizamón-Robayo, A. Jiménez-Pastor, M. Tribastone, M. Tschaikowski, A. Vandin Approximate Constrained Lumping of Chemical Reaction Networks
arXiv:2411.14242, 2024
N. A. Viswan, A. Tribut, M. Gasparyan, O. Radulescu, U. S. Bhalla Mathematical basis and toolchain for hierarchical optimization of biochemical networks
PLOS Computational Biology
E. Feliu, O. Henriksson, B. Pascual-Escudero Dimension and Degeneracy of Solutions of Parametric Polynomial Systems Arising from Reaction Networks
arXiv:2304.02302, 2023
Engineering Biology Research Consortium An Assessment of Short-Term Milestones in EBRC's 2019 Roadmap, Engineering Biology
Retrieved from http://roadmap.ebrc.org
C. Mou, W. Ju Sparse Triangular Decomposition for Computing Equilibria of Biological Dynamic Systems Based on Chordal Graphs
IEEE/ACM Transactions on Computational Biology and Bioinformatics
A. Desoeuvres, A. Iosif, C. Lüders, O. Radulescu, H. Rahkooy, M. Seiß, T. Sturm A Computational Approach to Complete Exact and Approximate Conservation Laws of Chemical Reaction Networks
arXiv:2212.14881, 2022
A. Desoeuvres, A. Iosif, C. Lüders, O. Radulescu, H. Rahkooy, M. Seiß, T. Sturm Reduction of Chemical Reaction Networks with Approximate Conservation Laws
arXiv:2212.13474, 2022
D. Grigoriev, A. Iosif, H. Rahkooy, T. Sturm, A. Weber Efficiently and Effectively Recognizing Toricity of Steady State Varieties
Math. Comput. Sci., 15(2):199–232, 2021
W. Ju, C. Mou Exploiting Variable Sparsity in Computing Equilibria of Biological Dynamical Systems by Triangular Decomposition
AlCoB 2021, LNBI 12715, pp.29–41, 2021
N. Kruff, C. Lüders, O. Radulescu, T. Sturm, S. Walcher Algorithmic Reduction of Biological Networks With Multiple Time Scales
Math. Comput. Sci. 15(3):499–534, 2021